IMPACT OF FEEDING PRACTICE ON DIVERSITY PATTERN OF THE GUT MICROBIOME IN INFANTS

Authors

  • Mehwish Durrani Khyber Medical University
  • Rubina Nazli Professor Khyber medical University
  • Sadia Fatima Associate Professor Khyber Medical University
  • Muhammad Abu Bakr Assistant professor Pak International Medical College, peshawar

Abstract

Background: The microbiome which is developed at the time of infancy remains predominant and influences the health in childhood and then throughout life through moderating different gut metabolic activities This study was designed to look for the impact of feeding practices on the diversity of gut microbiota in infants in a Pakistani cohort. Methods: A cross sectional study was carried out in 46 healthy infants [23breast-fed (BF) and 23 formula-fed (FF)], aged 0–4 months, enrolled from different centers and localities in Peshawar. Infants were screened to exclude any pathological or physiological condition that can vary the gut microbial flora such as gut surgeries and the use of antibiotics. Their stool samples were collected. DNA was extracted and subjected to next generation sequencing. Results: The results revealed that phylum Firmicutes was dominant in formula-fed infants (FF=25.4±22.7, BF=4.58±5.21), p=0.001. Similarly, Bacilli, Streptococcaceae, and Streptococcus were significantly higher in formula-fed infants. On the other hand, Selenomonadales and Streptococcus_salivarius were significantly higher in breast-fed infants with a p-value of 0.037 and 0.029 respectively when compared with formula fed infants. Conclusion: The primary colonizer of the infant’s gut is phylum Firmicutes, followed by Bacilli, Streptococcaceae, and Streptococcus in formula-fed infants and Selenomonadales and Streptococcus_salivarius in breast-fed infants.Keywords: Gut microbiota; breast-fed infants; formula-fed infants; next generation sequencing

Author Biographies

Mehwish Durrani, Khyber Medical University

Associae Professor Institute of Basicx Medical Sciences,KMU

Rubina Nazli, Professor Khyber medical University

Professor & Head Deptt of Biochemistry

Sadia Fatima, Associate Professor Khyber Medical University

Biochemistry Deptt

Muhammad Abu Bakr, Assistant professor Pak International Medical College, peshawar

Assistant professor Pak International Medical College, peshawar

References

Castanys-Muñoz E, Martin MJ, Vazquez E. Building a beneficial microbiome from birth. Advances in Nutrition. 2016;7(2):323-30.

Hibberd MC, Wu M, Rodionov DA, Li X, Cheng J, Griffin NW, et al. The effects of micronutrient deficiencies on bacterial species from the human gut microbiota. Sci Transl Med. 2017;9(390).

Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. science. 2005;307(5717):1915-20.

Thomas F, Hehemann J-H, Rebuffet E, Czjzek M, Michel G. Environmental and gut bacteroidetes: the food connection. Frontiers in microbiology. 2011;2:93.

Rodríguez JM, Murphy K, Stanton C, Ross RP, Kober OI, Juge N, et al. The composition of the gut microbiota throughout life, with an emphasis on early life. Microbial ecology in health and disease. 2015;26(1):26050.

Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA. The application of ecological theory toward an understanding of the human microbiome. Science. 2012;336(6086):1255-62.

Stanislawski MA, Dabelea D, Wagner BD, Sontag MK, Lozupone CA, Eggesbø M. Pre-pregnancy weight, gestational weight gain, and the gut microbiota of mothers and their infants. Microbiome. 2017;5(1):113.

Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, et al. The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota. Microbiology and molecular biology reviews. 2017;81(4):e00036-17.

Avershina E, Lundgard K, Sekelja M, Dotterud C, Storro O, Oien T, et al. Transition from infant- to adult-like gut microbiota. Environ Microbiol. 2016;18(7):2226-36.

Tun HM, Konya T, Takaro TK, Brook JR, Chari R, Field CJ, et al. Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios. Microbiome. 2017;5(1):40.

Fallani M, Young D, Scott J, Norin E, Amarri S, Adam R, et al. Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics. Journal of pediatric gastroenterology and nutrition. 2010;51(1):77-84.

O'Sullivan A, Farver M, Smilowitz JT. Article Commentary: The Influence of Early Infant-Feeding Practices on the Intestinal Microbiome and Body Composition in Infants. Nutrition and metabolic insights. 2015;8:NMI. S29530.

Maynard CL, Elson CO, Hatton RD, Weaver CT. Reciprocal interactions of the intestinal microbiota and immune system. Nature. 2012;489(7415):231.

Edwards CA. Determinants and duration of impact of early gut bacterial colonization. Annals of Nutrition and Metabolism. 2017;70(3):246-50.

Praveen P, Jordan F, Priami C, Morine MJ. The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome. Microbiome. 2015;3(1):41.

Guaraldi F, Salvatori G. Effect of breast and formula feeding on gut microbiota shaping in newborns. Frontiers in cellular and infection microbiology. 2012;2:94.

Gritz EC, Bhandari V. The human neonatal gut microbiome: a brief review. Frontiers in pediatrics. 2015;3:17.

Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114-20.

Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature methods. 2012;9(4):357.

Truong DT, Franzosa EA, Tickle TL, Scholz M, Weingart G, Pasolli E, et al. MetaPhlAn2 for enhanced metagenomic taxonomic profiling. Nature methods. 2015;12(10):902.

Timmerman HM, Rutten NB, Boekhorst J, Saulnier DM, Kortman GA, Contractor N, et al. Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures. Scientific reports. 2017;7(1):8327.

Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proceedings of the National Academy of Sciences. 2010;107(26):11971-5.

Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I, et al. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics. 2006;118(2):511-21.

Lee SA, Lim JY, Kim B-S, Cho SJ, Kim NY, Kim OB, et al. Comparison of the gut microbiota profile in breast-fed and formula-fed Korean infants using pyrosequencing. Nutrition research and practice. 2015;9(3):242-8.

Fan W, Huo G, Li X, Yang L, Duan C. Impact of diet in shaping gut microbiota revealed by a comparative study in infants during the first six months of life. Journal of microbiology and biotechnology. 2014;24(2):133-43.

Harmsen HJ, Wildeboer-Veloo AC, Raangs GC, Wagendorp AA, Klijn N, Bindels JG, et al. Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. Journal of pediatric gastroenterology and nutrition. 2000;30(1):61-7.

Penders J, Vink C, Driessen C, London N, Thijs C, Stobberingh EE. Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. FEMS microbiology letters. 2005;243(1):141-7.

Martin F, Savage SAH, Parrett AM, Gramet F, Dore J, Edwards C. Investigation of bacterial colonization of the colon in breast-fed infants using novel techniques2000. 64A-A p.

Tannock G. The acquisition of the normal microflora of the gastrointestinal tract. Human Health: Springer; 1994. p. 1-16.

Biagi E, Quercia S, Aceti A, Beghetti I, Rampelli S, Turroni S, et al. The Bacterial Ecosystem of Mother's Milk and Infant's Mouth and Gut. Frontiers in microbiology. 2017;8:1214-.

Guarino A, Wudy A, Basile F, Ruberto E, Buccigrossi V. Retraction: Composition and roles of intestinal microbiota in children. The Journal of Maternal-Fetal & Neonatal Medicine. 2012;25(sup1):63-6.

Gueimonde M, Laitinen K, Salminen S, Isolauri E. Breast milk: a source of bifidobacteria for infant gut development and maturation? Neonatology. 2007;92(1):64-6.

Hascoet JM, Hubert C, Rochat F, Legagneur H, Gaga S, Emady-Azar S, et al. Effect of formula composition on the development of infant gut microbiota. Journal of pediatric gastroenterology and nutrition. 2011;52(6):756-62.

Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I, et al. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics. 2006;118(2):511-21.

Published

2020-10-07

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